epipack
0.1.5
About
Tutorial
Introduction
Numeric Models
Symbolic Models
Network/Well-Mixed Simulations
Time-Varying Rates
Interactive Integrations
Visualizations
Reaction-Diffusion Systems
Temporal Networks
Dev Guide
State-Altering Tuples
Matrix-Based Models
Stochastic Simulations
Gillespie's SSA
Testing
Visualizations
Color Handling
API
Numeric Models
Symbolic Models
Stochastic Models
Temporal Networks
Process Conversions
Visualization
Interactive
Mock Samplable Set
Integrators
Networks
Colors
Numeric Matrix-Based Models
Symbolic Matrix-Based Models
Plot Tools
Distributions
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epipack
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About
Tutorial
Introduction
Constant Rates
Functional Rates
Numeric Models
A Simple Example
Controlled Definition with Events
Stochastic Simulations
Dynamically Changing Population Size
Integrating Until a Condition is Reached
Symbolic Models
Example: SIRS model
Analyze Numerically and Stochastically
Interactive Analysis
Pure ODE Models
Network/Well-Mixed Simulations
Network Example
Conditional Transmission Processes
Well-Mixed Systems
Time-Varying Rates
Numeric Models
Symbolic Models
Interactive Integrations
Example: SIRS Model
More customization
General interaction widget
Visualizations
Basics
Network Layout
Grid Layout
Lattice simulation
Reaction-Diffusion Systems
Networks
Visualization
Lattices
Temporal Networks
Temporal Network Objects
Construct Temporal Networks with Tacoma
Simulate with StochasticEpiModel
Dev Guide
State-Altering Tuples
Processes
Events
Rates
Node-Based Events
Matrix-Based Models
Intro
Choice of Data Structures
Setting Rates
Integrating ODEs
Stochastic Simulations
Node-Based Events
Compartment-Based Events
Gillespie's SSA
Homogeneous Poisson Processes
Inhomogeneous Poisson Processes
Temporal Networks
Testing
Visualizations
Video Conversion and Docs
Color Handling
Colors
Palettes
API
Numeric Models
Symbolic Models
Stochastic Models
Temporal Networks
Process Conversions
Visualization
Interactive
Mock Samplable Set
Integrators
Networks
Colors
Numeric Matrix-Based Models
Symbolic Matrix-Based Models
Plot Tools
Distributions