Testing

All critical methods come with extensive test cases.

This includes tests based on the Kullback-Leibler divergence between expected distributions and distributions obtained by simulations on toy systems (including networks and time-varying rate simulations).

Please make sure to run the entire test suite before opening a pull request. This can be done by calling

make test

Alternatively, the test command is

pytest --cov=epipack epipack/tests/

The tests should take 15-20 minutes. After the tests have passed, you can check the coverage by calling

open htmlcov/index.html

(or xopen on Linux).