epipack

• About

Tutorial

• Introduction
  • Constant Rates
  • Functional Rates
• Numeric Models
  • A Simple Example
  • Controlled Definition with Events
  • Stochastic Simulations
  • Dynamically Changing Population Size
  • Integrating Until a Condition is Reached
• Symbolic Models
  • Example: SIRS model
  • Analyze Numerically and Stochastically
  • Interactive Analysis
  • Pure ODE Models
• Network/Well-Mixed Simulations
  • Network Example
  • Conditional Transmission Processes
  • Well-Mixed Systems
• Time-Varying Rates
  • Numeric Models
  • Symbolic Models
• Interactive Integrations
  • Example: SIRS Model
  • More customization
  • General interaction widget
• Visualizations
  • Basics
  • Network Layout
  • Grid Layout
  • Lattice simulation
• Reaction-Diffusion Systems
  • Networks
  • Visualization
  • Lattices
• Temporal Networks
  • Temporal Network Objects
  • Construct Temporal Networks with Tacoma
  • Simulate with StochasticEpiModel

Dev Guide

• State-Altering Tuples
  • Processes
  • Events
  • Rates
  • Node-Based Events
• Matrix-Based Models
  • Intro
  • Choice of Data Structures
  • Setting Rates
  • Integrating ODEs
• Stochastic Simulations
  • Node-Based Events
  • Compartment-Based Events
• Gillespie's SSA
  • Homogeneous Poisson Processes
  • Inhomogeneous Poisson Processes
  • Temporal Networks
• Testing
• Visualizations
  • Video Conversion and Docs
• Color Handling
  • Colors
  • Palettes

API

• Numeric Models
• Symbolic Models
• Stochastic Models
• Temporal Networks
• Process Conversions
• Visualization
• Interactive
• Mock Samplable Set
• Integrators
• Networks
• Colors
• Numeric Matrix-Based Models
• Symbolic Matrix-Based Models
• Plot Tools
• Distributions